library(stockassessment)
setwd("run")
load("data.RData")
conf<-loadConf(dat,"../conf/model.cfg", patch=TRUE)
par<-defpar(dat,conf)
fit<-sam.fit(dat,conf,par)
if(fit$opt$convergence!=0) stop("Model did not converge.")
jit.fit <-jit(fit,nojit=100)
save(fit, jit.fit, file="model.RData")