library(stockassessment)
setwd("run")
load("data.RData")
conf<-loadConf(dat,"../conf/model.cfg", patch=TRUE)
par<-defpar(dat,conf)
## Fix survival process error:
par$logSdLogN[2] <- -6 # -5 at benchmark
map <- list()
map$logSdLogN <- factor(c(0,NA))
fit<-sam.fit(dat,conf,par, map=map)
##
if(fit$opt$convergence!=0) stop("Model did not converge.")
save(fit, file="model.RData")