###____________________ IMPORTS ___________________________________ ## Base R - packages ---------------------- importFrom("graphics", abline, legend, matplot, plot) importFrom("methods", as, is, new, cbind2, rbind2) importFrom("stats", approx, confint, integrate, median, nlminb, optim, optimHess, pchisq, qchisq, qnorm, rnorm, runif, sd, splinefun, uniroot, var) importFrom("utils", as.relistable, relist, head, tail) ## Windows specific imports if(.Platform$OS.type == "windows"){ importFrom("utils", shortPathName) } ## TMB:::install.contrib importFrom("utils", download.file, file_test, unzip) ## TMB:::.onLoad importFrom("utils", packageVersion) ## Recommended R - packages ---------------------- importClassesFrom("Matrix")# all currently (FIXME) , corMatrix, dgCMatrix, dgTMatrix, dpoMatrix) importMethodsFrom("Matrix", coerce, cov2cor, determinant, drop, "%*%", crossprod,tcrossprod, t, diag, chol2inv, solve, colSums,rowSums) importFrom("Matrix", Cholesky, forceSymmetric, invPerm, tril, triu, Diagonal) ###____________________ EXPORTS ___________________________________ export(benchmark, checkConsistency, compile, config, dynlib, FreeADFun, gdbsource, MakeADFun, newton, newtonOption, normalize, oneStepPredict, openmp, plot.parallelBenchmark, plot.tmbprofile, precompile, print.backtrace, print.checkConsistency, print.sdreport, Rinterface, runExample, runSymbolicAnalysis, sdreport, summary.checkConsistency, summary.sdreport, template, tmbprofile, tmbroot) ## Methods : S3method(confint, tmbprofile) S3method(plot, tmbprofile) S3method(print, sdreport) S3method(summary, sdreport) S3method(as.list, sdreport) S3method(plot, parallelBenchmark) S3method(print, backtrace) S3method(print, checkConsistency) S3method(summary, checkConsistency)